BioFetch interface to GenomeNet/DBGET

This page allows you to retrieve up to 50 entries at a time from various up-to-date biological databases.

Direct access

(NOTE: the option separator ';' can be '&')

format (optional): default|fasta|...
style (required): html|raw
db (required): genbank|refseq|embl|swissprot|pir|prf|pdb|epd|prosite|pmd|litdb|omim|pathway|genes|genome|linkdb|aaindex|...
id (required): comma separated list of IDs

See the BioFetch specification for more details.

What databases are available?: http://bioruby.org/cgi-bin/biofetch.rb?info=dbs
What formats does the database X have?: http://bioruby.org/cgi-bin/biofetch.rb?info=formats;db=embl
How many entries can be retrieved simultaneously?: http://bioruby.org/cgi-bin/biofetch.rb?info=maxids

gb:AJ617376 (default/raw): http://bioruby.org/cgi-bin/biofetch.rb?format=default;style=raw;db=genbank;id=AJ617376
gb:AJ617376 (fasta/raw): http://bioruby.org/cgi-bin/biofetch.rb?format=fasta;style=raw;db=genbank;id=AJ617376
gb:AJ617376 (default/html): http://bioruby.org/cgi-bin/biofetch.rb?format=default;style=html;db=genbank;id=AJ617376
gb:AJ617376,AJ617377 (default/raw, multiple): http://bioruby.org/cgi-bin/biofetch.rb?format=default;style=raw;db=genbank;id=AJ617376,AJ617377
embl:BUM (default/raw): http://bioruby.org/cgi-bin/biofetch.rb?format=default;style=raw;db=embl;id=BUM
sp:CYC_BOVIN (default/raw): http://bioruby.org/cgi-bin/biofetch.rb?format=default;style=raw;db=swissprot;id=CYC_BOVIN
sp:CYC_BOVIN (fasta/raw): http://bioruby.org/cgi-bin/biofetch.rb?format=fasta;style=raw;db=swissprot;id=CYC_BOVIN
genes:b0015 (default/raw): http://bioruby.org/cgi-bin/biofetch.rb?format=default;style=raw;db=genes;id=b0015
ps:PS00028 (default/raw): http://bioruby.org/cgi-bin/biofetch.rb?format=default;style=raw;db=prosite;id=PS00028

Error1 sample : DB not found: http://bioruby.org/cgi-bin/biofetch.rb?format=default;style=raw;db=nonexistent;id=AJ617376"
Error2 sample : unknown style: http://bioruby.org/cgi-bin/biofetch.rb?format=default;style=nonexistent;db=genbank;id=AJ617376"
Error3 sample : unknown format: http://bioruby.org/cgi-bin/biofetch.rb?format=nonexistent;style=raw;db=genbank;id=AJ617376"
Error4 sample : ID not found: http://bioruby.org/cgi-bin/biofetch.rb?format=default;style=raw;db=genbank;id=nonexistent"
Error5 sample : too many IDs: http://bioruby.org/cgi-bin/biofetch.rb?style=raw;db=genes;id=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51
Error6 sample : unknown info: http://bioruby.org/cgi-bin/biofetch.rb?info=nonexistent"

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