bio/appl/blast/format0.rb - BLAST default output (-m 0) parser
| Copyright: | Copyright (C) 2003-2006 GOTO Naohisa <ng@bioruby.org>
|
| License: | The Ruby License
|
$Id: format0.rb,v 1.22 2007/04/21 08:58:17 ngoto Exp $
Description
NCBI BLAST default (-m 0 option) output parser.
References
- Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui
Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped
BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
- www.ncbi.nlm.nih.gov/blast/
Required files
strscan
singleton
bio/io/flatfile