Bio::DDBJ::XML::Fasta

Fasta

Searching database using the Fasta package.

• xml.nig.ac.jp/doc/Fasta.txt

Examples

serv = Bio::DDBJ::XML::Fasta.new
query = ">Test\nMSDGAVQPDG GQPAVRNERA TGSGNGSGGG GGGGSGGVGI"

puts serv.searchSimple('fasta34', 'PDB', query)
query = ">Test\nAGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC"
puts serv.searchParam('fastx34_t', 'PDB', query, '-n')

WSDL Methods

• searchSimple(program, database, query)

• searchParam(program, database, query, param)

References

• xml.nig.ac.jp/doc/Fasta.txt