class Bio::FANTOM::MaXML::Annotations

    # File lib/bio/db/fantom.rb
302 def [](*arg)
303   if arg[0].is_a?(String) and arg.size == 1 then
304     get_by_qualifier(arg[0])
305   else
306     to_a[*arg]
307   end
308 end

    # File lib/bio/db/fantom.rb
310 def cds_start
311   unless defined?(@cds_start)
312     e = get_by_qualifier('cds_start')
313     @cds_start = e ? e.anntext.to_i : nil
314   end
315   @cds_start
316 end

    # File lib/bio/db/fantom.rb
318 def cds_stop
319   unless defined?(@cds_stop)
320     e = get_by_qualifier('cds_stop')
321     @cds_stop = e ? e.anntext.to_i : nil
322   end
323   @cds_stop
324 end

    # File lib/bio/db/fantom.rb
334 def data_source
335   unless defined?(@data_source)
336     e = get_by_qualifier('gene_name')
337     @data_source = e ? e.datasrc[0] : nil
338   end
339   @data_source
340 end

    # File lib/bio/db/fantom.rb
273 def each
274   to_a.each { |x| yield x }
275 end

    # File lib/bio/db/fantom.rb
342 def evidence
343   unless defined?(@evidence)
344     e = get_by_qualifier('gene_name')
345     @evidence = e ? e.evidence : nil
346   end
347   @evidence
348 end

    # File lib/bio/db/fantom.rb
326 def gene_name
327   unless defined?(@gene_name)
328     e = get_by_qualifier('gene_name')
329     @gene_name = e ? e.anntext : nil
330   end
331   @gene_name
332 end

    # File lib/bio/db/fantom.rb
285 def get_all_by_qualifier(qstr)
286   unless defined?(@hash)
287     @hash = {}
288   end
289   unless @hash.member?(qstr) then
290     @hash[qstr] = self.find_all do |x|
291       x.qualifier == qstr
292     end
293   end
294   @hash[qstr]
295 end

    # File lib/bio/db/fantom.rb
297 def get_by_qualifier(qstr)
298   a = get_all_by_qualifier(qstr)
299   a ? a[0] : nil
300 end

    # File lib/bio/db/fantom.rb
277 def to_a
278   unless defined?(@a)
279     @a = @elem.get_elements('annotation')
280     @a.collect! { |e| MaXML::Annotation.new(e) }
281   end
282   @a
283 end