class Bio::Iprscan::Report::Match

Description¶ ↑

Container class for InterProScan matches.

Usage¶ ↑

match = Match.new(:query_id => ...)

match.ipr_id = 'IPR001234'
match.ipr_id #=> 'IPR001234'

Public Class Methods

new (hash)

Source

    # File lib/bio/appl/iprscan/report.rb
323 def initialize(hash)
324   @data = Hash.new
325   hash.each do |key, value|
326     @data[key.to_sym] = value
327   end
328 end

Public Instance Methods

accession ()

Source

    # File lib/bio/appl/iprscan/report.rb
351 def accession;       @data[:accession];       end

the database members entry for this match.

crc64 ()

Source

    # File lib/bio/appl/iprscan/report.rb
333 def crc64;           @data[:crc64];           end

CRC64 checksum of query sequence.

date ()

Source

    # File lib/bio/appl/iprscan/report.rb
331 def date;            @data[:date];            end

Date for computation.

description ()

Source

    # File lib/bio/appl/iprscan/report.rb
353 def description;     @data[:description];     end

the database mambers description for this match.

evalue ()

Source

    # File lib/bio/appl/iprscan/report.rb
335 def evalue;          @data[:evalue];          end

E-value of the match

go_terms ()

Source

    # File lib/bio/appl/iprscan/report.rb
345 def go_terms;        @data[:go_terms];        end

the Gene Ontology description for the InterPro entry, in “Aspect :term (ID)” format.

ipr_id ()

Source

    # File lib/bio/appl/iprscan/report.rb
339 def ipr_id;          @data[:ipr_id];          end

the corresponding InterPro entry (if any).

ipr_odescription ()

Source

    # File lib/bio/appl/iprscan/report.rb
357 def ipr_odescription; @data[:ipr_description]; end

the descriotion of the InterPro entry.

length ()

Source

    # File lib/bio/appl/iprscan/report.rb
341 def length;          @data[:length];          end

the length of the sequence in AA.

match_end ()

Source

    # File lib/bio/appl/iprscan/report.rb
349 def match_end;       @data[:match_end];       end

the end of the domain match.

match_start ()

Source

    # File lib/bio/appl/iprscan/report.rb
355 def match_start;     @data[:match_start];     end

the start of the domain match.

method_missing (name, arg = nil)

Source

    # File lib/bio/appl/iprscan/report.rb
359 def method_missing(name, arg = nil)
360   if arg
361     name = name.to_s.sub(/=$/, '') 
362     @data[name.to_sym] = arg 
363   else
364     @data[name.to_sym]
365   end
366 end

method_name ()

Source

    # File lib/bio/appl/iprscan/report.rb
343 def method_name;          @data[:method];          end

the analysis method launched.

query_id ()

Source

    # File lib/bio/appl/iprscan/report.rb
347 def query_id;        @data[:query_id];        end

Id of the input sequence.

status ()

Source

    # File lib/bio/appl/iprscan/report.rb
337 def status;          @data[:status];          end

Status of the match (T for true / M for marginal).