class Bio::Iprscan::Report::Match

Description¶ ↑

Container class for InterProScan matches.

Usage¶ ↑

match = Match.new(:query_id => ...)

match.ipr_id = 'IPR001234'
match.ipr_id #=> 'IPR001234'

Public Class Methods

new(hash) click to toggle source

    # File lib/bio/appl/iprscan/report.rb
322 def initialize(hash)
323   @data = Hash.new
324   hash.each do |key, value|
325     @data[key.to_sym] = value
326   end
327 end

Public Instance Methods

accession() click to toggle source

the database members entry for this match.

    # File lib/bio/appl/iprscan/report.rb
350 def accession;       @data[:accession];       end

crc64() click to toggle source

CRC64 checksum of query sequence.

    # File lib/bio/appl/iprscan/report.rb
332 def crc64;           @data[:crc64];           end

date() click to toggle source

Date for computation.

    # File lib/bio/appl/iprscan/report.rb
330 def date;            @data[:date];            end

description() click to toggle source

the database mambers description for this match.

    # File lib/bio/appl/iprscan/report.rb
352 def description;     @data[:description];     end

evalue() click to toggle source

E-value of the match

    # File lib/bio/appl/iprscan/report.rb
334 def evalue;          @data[:evalue];          end

go_terms() click to toggle source

the Gene Ontology description for the InterPro entry, in “Aspect :term (ID)” format.

    # File lib/bio/appl/iprscan/report.rb
344 def go_terms;        @data[:go_terms];        end

ipr_id() click to toggle source

the corresponding InterPro entry (if any).

    # File lib/bio/appl/iprscan/report.rb
338 def ipr_id;          @data[:ipr_id];          end

ipr_odescription() click to toggle source

the descriotion of the InterPro entry.

    # File lib/bio/appl/iprscan/report.rb
356 def ipr_odescription; @data[:ipr_description]; end

length() click to toggle source

the length of the sequence in AA.

    # File lib/bio/appl/iprscan/report.rb
340 def length;          @data[:length];          end

match_end() click to toggle source

the end of the domain match.

    # File lib/bio/appl/iprscan/report.rb
348 def match_end;       @data[:match_end];       end

match_start() click to toggle source

the start of the domain match.

    # File lib/bio/appl/iprscan/report.rb
354 def match_start;     @data[:match_start];     end

method_missing(name, arg = nil) click to toggle source

    # File lib/bio/appl/iprscan/report.rb
358 def method_missing(name, arg = nil)
359   if arg
360     name = name.to_s.sub(/=$/, '') 
361     @data[name.to_sym] = arg 
362   else
363     @data[name.to_sym]
364   end
365 end

method_name() click to toggle source

the analysis method launched.

    # File lib/bio/appl/iprscan/report.rb
342 def method_name;          @data[:method];          end

query_id() click to toggle source

Id of the input sequence.

    # File lib/bio/appl/iprscan/report.rb
346 def query_id;        @data[:query_id];        end

status() click to toggle source

Status of the match (T for true / M for marginal).

    # File lib/bio/appl/iprscan/report.rb
336 def status;          @data[:status];          end