class Bio::KEGG::KGML::Entry
Attributes
type of this entry (String or nil). Normally one of the following:
-
“ortholog”
-
“enzyme”
-
“reaction”
-
“gene”
-
“group”
-
“compound”
-
“map”
See www.genome.jp/kegg/xml/docs/ for details. (‘type’ attribute in ‘entry’ element)
type of this entry (String or nil). Normally one of the following:
-
“ortholog”
-
“enzyme”
-
“reaction”
-
“gene”
-
“group”
-
“compound”
-
“map”
See www.genome.jp/kegg/xml/docs/ for details. (‘type’ attribute in ‘entry’ element)
component elements included in this entry (Array containing Integer objects, or nil)
ID of this entry in this pathway map (Integer or nil). (‘id’ attribute in ‘entry’ element)
ID of this entry in this pathway map (Integer or nil). (‘id’ attribute in ‘entry’ element)
graphics elements included in this entry (Array containing Graphics
objects, or nil)
ID of this entry in this pathway map (Integer or nil). (‘id’ attribute in ‘entry’ element)
URL pointing information about this entry (String or nil)
KEGG-style ID string of this entry (String or nil)
(Deprecated?) (‘map’ attribute in ‘entry’ element)
KEGG-style ID string of this reaction (String or nil)
type of this entry (String or nil). Normally one of the following:
-
“ortholog”
-
“enzyme”
-
“reaction”
-
“gene”
-
“group”
-
“compound”
-
“map”
See www.genome.jp/kegg/xml/docs/ for details. (‘type’ attribute in ‘entry’ element)
Public Instance Methods
Deprecated. Same as self.graphics.bgcolor (additional nil checks may be needed).
background color (String or nil) (‘graphics’ element)
# File lib/bio/db/kegg/kgml.rb 360 def bgcolor 361 _graphics_attr(:bgcolor) 362 end
Deprecated. Same as self.graphics.bgcolor= (additional nil checks may be needed).
# File lib/bio/db/kegg/kgml.rb 367 def bgcolor=(val) 368 _graphics_set_attr(:bgcolor=, val) 369 end
Deprecated. Same as self.graphics.fgcolor (additional nil checks may be needed).
foreground color (String or nil) (‘graphics’ element)
# File lib/bio/db/kegg/kgml.rb 345 def fgcolor 346 _graphics_attr(:fgcolor) 347 end
Deprecated. Same as self.graphics.fgcolor= (additional nil checks may be needed).
# File lib/bio/db/kegg/kgml.rb 352 def fgcolor=(val) 353 _graphics_set_attr(:fgcolor=, val) 354 end
Deprecated. Same as self.graphics.height (additional nil checks may be needed).
height (Integer or nil) (‘graphics’ element)
# File lib/bio/db/kegg/kgml.rb 330 def height 331 _graphics_attr(:height) 332 end
Deprecated. Same as self.graphics.height= (additional nil checks may be needed).
# File lib/bio/db/kegg/kgml.rb 337 def height=(val) 338 _graphics_set_attr(:height=, val) 339 end
Deprecated. Same as self.graphics.name (additional nil checks may be needed).
label of the ‘graphics’ element (String or nil) (‘name’ attribute in ‘graphics’ element)
# File lib/bio/db/kegg/kgml.rb 248 def label 249 _graphics_attr(:name) 250 end
Deprecated. Same as self.graphics.name= (additional nil checks may be needed).
# File lib/bio/db/kegg/kgml.rb 255 def label=(val) 256 _graphics_set_attr(:name=, val) 257 end
the “name” attribute may contain multiple names separated with space characters. This method returns the names as an array. (Array containing String objects)
# File lib/bio/db/kegg/kgml.rb 382 def names 383 @name.split(/\s+/) 384 end
Deprecated. Same as self.graphics.type (additional nil checks may be needed).
shape of the ‘graphics’ element (String or nil) Normally one of the following:
-
“rectangle”
-
“circle”
-
“roundrectangle”
-
“line”
If not specified, “rectangle” is the default value. (‘type’ attribute in ‘graphics’ element)
# File lib/bio/db/kegg/kgml.rb 270 def shape 271 _graphics_attr(:type) 272 end
Deprecated. Same as self.graphics.type= (additional nil checks may be needed).
# File lib/bio/db/kegg/kgml.rb 277 def shape=(val) 278 _graphics_set_attr(:type=, val) 279 end
Deprecated. Same as self.graphics.width (additional nil checks may be needed).
width (Integer or nil) (‘graphics’ element)
# File lib/bio/db/kegg/kgml.rb 315 def width 316 _graphics_attr(:width) 317 end
Deprecated. Same as self.graphics.width= (additional nil checks may be needed).
# File lib/bio/db/kegg/kgml.rb 322 def width=(val) 323 _graphics_set_attr(:width=, val) 324 end
Deprecated. Same as self.graphics.x (additional nil checks may be needed).
X axis position (Integer or nil) (‘graphics’ element)
# File lib/bio/db/kegg/kgml.rb 285 def x 286 _graphics_attr(:x) 287 end
Deprecated. Same as self.graphics.x= (additional nil checks may be needed).
# File lib/bio/db/kegg/kgml.rb 292 def x=(val) 293 _graphics_set_attr(:x=, val) 294 end
Deprecated. Same as self.graphics.y (additional nil checks may be needed).
Y axis position (Integer or nil) (‘graphics’ element)
# File lib/bio/db/kegg/kgml.rb 300 def y 301 _graphics_attr(:y) 302 end
Deprecated. Same as self.graphics.y= (additional nil checks may be needed).
# File lib/bio/db/kegg/kgml.rb 307 def y=(val) 308 _graphics_set_attr(:y=, val) 309 end