module Bio::Shell

bio/shell/demo.rb - demo mode for the BioRuby shell

Copyright

Copyright (C) 2006 Toshiaki Katayama <k@bioruby.org>

License

The Ruby License

$Id: demo.rb,v 1.4 2007/04/05 23:35:41 trevor Exp $

bio/shell/interface.rb - core user interface of the BioRuby shell

Copyright

Copyright (C) 2005 Toshiaki Katayama <k@bioruby.org>

License

The Ruby License

bio/shell/irb.rb - CUI for the BioRuby shell

Copyright

Copyright (C) 2006 Toshiaki Katayama <k@bioruby.org>

License

The Ruby License

bio/shell/plugin/blast.rb - plugin for BLAST services

Copyright

Copyright (C) 2006 Toshiaki Katayama <k@bioruby.org>

License

The Ruby License

$Id: blast.rb,v 1.3 2007/04/05 23:35:41 trevor Exp $

bio/shell/plugin/codon.rb - plugin for the codon table

Copyright

Copyright (C) 2005 Toshiaki Katayama <k@bioruby.org>

License

The Ruby License

$Id: codon.rb,v 1.16 2007/04/05 23:35:41 trevor Exp $

bio/shell/plugin/emboss.rb - methods to use EMBOSS

Copyright

Copyright (C) 2005 Toshiaki Katayama <k@bioruby.org>

License

The Ruby License

$Id: emboss.rb,v 1.3 2007/04/05 23:35:41 trevor Exp $

bio/shell/plugin/entry.rb - extract entry and sequence

Copyright

Copyright (C) 2005 Toshiaki Katayama <k@bioruby.org>

License

The Ruby License

bio/shell/plugin/flatfile.rb - plugin for flatfile database

Copyright

Copyright (C) 2005 Toshiaki Katayama <k@bioruby.org>

License

The Ruby License

$Id: flatfile.rb,v 1.13 2007/04/05 23:45:11 trevor Exp $

bio/shell/plugin/ncbirest.rb - plugin for NCBI eUtils

Copyright

Copyright (C) 2009 Naohisa Goto <ng@bioruby.org>

License

The Ruby License

$Id:$

bio/shell/plugin/obda.rb - plugin for OBDA

Copyright

Copyright (C) 2005 Toshiaki Katayama <k@bioruby.org>

License

The Ruby License

$Id: obda.rb,v 1.10 2007/04/05 23:45:11 trevor Exp $

bio/shell/plugin/psort.rb - plugin for PSORT

Copyright

Copyright (C) 2006 Toshiaki Katayama <k@bioruby.org>

License

The Ruby License

$Id: psort.rb,v 1.3 2007/04/05 23:35:41 trevor Exp $

bio/shell/plugin/seq.rb - plugin for biological sequence manipulations

Copyright

Copyright (C) 2005 Toshiaki Katayama <k@bioruby.org>

License

The Ruby License

bio/shell/plugin/togows.rb - plugin for TogoWS REST service

Copyright

Copyright (C) 2009 Naohisa Goto <ng@bioruby.org>

License

The Ruby License

$Id:$

bio/shell/script.rb - script mode for the BioRuby shell

Copyright

Copyright (C) 2006 Toshiaki Katayama <k@bioruby.org>

License

The Ruby License

$Id: script.rb,v 1.3 2007/04/05 23:35:41 trevor Exp $

bio/shell/web.rb - GUI for the BioRuby shell

Copyright

Copyright (C) 2006 Nobuya Tanaka <t@chemruby.org>, Toshiaki Katayama <k@bioruby.org>

License

The Ruby License

$Id: web.rb,v 1.5 2007/06/26 08:38:38 k Exp $