# File lib/bio/appl/tmhmm/report.rb
85 def initialize(entry = nil)
86   begin
87     str = entry.to_str
88   rescue NoMethodError
89   end
90   if str then
91     entry = str.enum_for(:each_line)
92   end
93   parse_header(entry)
94   @tmhs = parse_tmhs(entry)
95 end

    # File lib/bio/appl/tmhmm/report.rb
 98 def helix
 99   @tmhs.map {|t| t if t.status == 'TMhelix' }.compact
100 end

    # File lib/bio/appl/tmhmm/report.rb
103 def to_s
104   [
105     [
106       ["Length:",                    @query_len],
107       ["Number of predicted TMHs:",  @predicted_tmhs],
108       ["Exp number of AAs in THMs:", @exp_aas_in_tmhs],
109       ["Exp number, first 60 AAs:",  @exp_first_60aa],
110       ["Total prob of N-in:",        @total_prob_of_N_in]
111     ].map {|e| "\# " + [@entry_id, e].flatten.join("\t") },
112     tmhs.map {|ent| ent.to_s }
113   ].flatten.join("\n")
114 end