bio/shell/demo.rb - demo mode for the BioRuby shell

$Id: demo.rb,v 1.4 2007/04/05 23:35:41 trevor Exp $

bio/shell/interface.rb - core user interface of the BioRuby shell

$Id: interface.rb,v 1.19 2007/11/15 07:08:49 k Exp $

bio/shell/irb.rb - CUI for the BioRuby shell

$Id: irb.rb,v 1.3 2007/04/05 23:35:41 trevor Exp $

bio/shell/plugin/blast.rb - plugin for BLAST services

$Id: blast.rb,v 1.3 2007/04/05 23:35:41 trevor Exp $

bio/shell/plugin/codon.rb - plugin for the codon table

$Id: codon.rb,v 1.16 2007/04/05 23:35:41 trevor Exp $

bio/shell/plugin/emboss.rb - methods to use EMBOSS

$Id: emboss.rb,v 1.3 2007/04/05 23:35:41 trevor Exp $

bio/shell/plugin/entry.rb - extract entry and sequence

$Id:$

bio/shell/plugin/flatfile.rb - plugin for flatfile database

$Id: flatfile.rb,v 1.13 2007/04/05 23:45:11 trevor Exp $

bio/shell/plugin/keggapi.rb - plugin for KEGG API

$Id: keggapi.rb,v 1.12 2007/04/05 23:35:41 trevor Exp $

bio/shell/plugin/ncbirest.rb - plugin for NCBI eUtils

$Id:$

bio/shell/plugin/obda.rb - plugin for OBDA

$Id: obda.rb,v 1.10 2007/04/05 23:45:11 trevor Exp $

bio/shell/plugin/psort.rb - plugin for PSORT

$Id: psort.rb,v 1.3 2007/04/05 23:35:41 trevor Exp $

bio/shell/plugin/seq.rb - plugin for biological sequence manipulations

$Id: seq.rb,v 1.21 2007/04/05 23:35:41 trevor Exp $

bio/shell/plugin/soap.rb - web services

$Id: soap.rb,v 1.1 2007/07/09 11:17:09 k Exp $

bio/shell/plugin/togows.rb - plugin for TogoWS REST service

$Id:$

bio/shell/script.rb - script mode for the BioRuby shell

$Id: script.rb,v 1.3 2007/04/05 23:35:41 trevor Exp $

bio/shell/web.rb - GUI for the BioRuby shell

$Id: web.rb,v 1.5 2007/06/26 08:38:38 k Exp $