class Bio::Alignment::FactoryTemplate::FileInFileOutWithTree
Template class for alignment application factory. The program needs: input: file (cannot accept stdin), format = fasta format output: file (parser should be specified by DEFAULT_PARSER) Tree
(*.dnd) output is also supported.
Attributes
output_dnd[R]
alignment guide tree generated by the program (*.dnd file)
Public Instance Methods
reset()
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Calls superclass method
Bio::Alignment::FactoryTemplate::Simple#reset
# File lib/bio/alignment.rb 2479 def reset 2480 @output_dnd = nil 2481 super 2482 end