class Bio::Alignment::FactoryTemplate::FileInFileOutWithTree

Template class for alignment application factory. The program needs: input: file (cannot accept stdin), format = fasta format output: file (parser should be specified by DEFAULT_PARSER) Tree (*.dnd) output is also supported.

Attributes

output_dnd [R]

alignment guide tree generated by the program (*.dnd file)

Public Instance Methods

reset ()

Source

     # File lib/bio/alignment.rb
2479 def reset
2480   @output_dnd = nil
2481   super
2482 end

Calls superclass method Bio::Alignment::FactoryTemplate::Simple#reset