class Bio::Alignment::FactoryTemplate::FileInFileOutWithTree

Template class for alignment application factory. The program needs: input: file (cannot accept stdin), format = fasta format output: file (parser should be specified by DEFAULT_PARSER) Tree (*.dnd) output is also supported.

Attributes

output_dnd[R]

alignment guide tree generated by the program (*.dnd file)

Public Instance Methods

reset() click to toggle source
# File lib/bio/alignment.rb, line 2479
def reset
  @output_dnd = nil
  super
end