class Bio::Blast::Report::Iteration
Attributes
hits[R]
Returns an Array of Bio::Blast::Report::Hit objects.
message[RW]
Returns a String (or nil) containing execution message (typically “CONVERGED”).
num[RW]
Returns the number of iteration counts.
query_def[RW]
query definition, only available for new BLAST XML format
query_id[RW]
query ID, only available for new BLAST XML format
query_len[RW]
query length, only available for new BLAST XML format
statistics[R]
Returns a Hash containing execution statistics. Valid keys are: ‘db-len’, ‘db-num’, ‘eff-space’, ‘entropy’, ‘hsp-len’, ‘kappa’, ‘lambda’
Public Class Methods
new()
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# File lib/bio/appl/blast/report.rb 219 def initialize 220 @message = nil 221 @statistics = {} 222 @num = 1 223 @hits = [] 224 end
Public Instance Methods
each() { |x| ... }
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Iterates on each Bio::Blast::Report::Hit object.
# File lib/bio/appl/blast/report.rb 241 def each 242 @hits.each do |x| 243 yield x 244 end 245 end