class Bio::Blast::WU::Report::Hit
Bio::Blast::WU::Report::Hit contains information about a hit. It may contain some Bio::Blast::WU::Report::HSP objects.
Because it inherits Bio::Blast::Default::Report::Hit, please also refer Bio::Blast::Default::Report::Hit.
Attributes
n-number (???)
p-value
Public Class Methods
Source
# File lib/bio/appl/blast/wublast.rb 406 def initialize(data) 407 @f0hitname = data.shift 408 @hsps = [] 409 while r = data.first 410 if r =~ /^\s*(?:Plus|Minus) +Strand +HSPs\:/ then 411 data.shift 412 r = data.first 413 end 414 if /\A\s+Score/ =~ r then 415 @hsps << HSP.new(data) 416 else 417 break 418 end 419 end 420 @again = false 421 end
Creates a new Hit object. It is designed to be called only internally from the Bio::Blast::WU::Report::Iteration class. Users should not call the method directly.
Public Instance Methods
Source
# File lib/bio/appl/blast/wublast.rb 424 def score 425 @score 426 end
Returns score.