class Bio::FANTOM::MaXML::Cluster
Constants
- Data_XPath
(
MaXML
cluster) fantom2.gsc.riken.go.jp/fantom/2.1/allclust.sep.xml.gz
Public Instance Methods
representative_annotations()
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# File lib/bio/db/fantom.rb 145 def representative_annotations 146 e = representative_sequence 147 e ? e.annotations : nil 148 end
representative_cloneid()
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# File lib/bio/db/fantom.rb 150 def representative_cloneid 151 e = representative_sequence 152 e ? e.cloneid : nil 153 end
representative_seqid()
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# File lib/bio/db/fantom.rb 116 def representative_seqid 117 unless defined?(@representative_seqid) 118 @representative_seqid = 119 gsub_entities(@elem.text('representative-seqid')) 120 end 121 @representative_seqid 122 end
representative_sequence()
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# File lib/bio/db/fantom.rb 135 def representative_sequence 136 unless defined?(@representative_sequence) 137 rid = representative_seqid 138 @representative_sequence = 139 rid ? sequences[representative_seqid] : nil 140 end 141 @representative_sequence 142 end
Also aliased as: representative_clone
sequence(idstr = nil)
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# File lib/bio/db/fantom.rb 131 def sequence(idstr = nil) 132 idstr ? sequences[idstr] : representative_sequence 133 end
sequences()
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# File lib/bio/db/fantom.rb 124 def sequences 125 unless defined?(@sequences) 126 @sequences = MaXML::Sequences.new(@elem) 127 end 128 @sequences 129 end