class Bio::GenBank::Locus
Parses the LOCUS line and returns contents of the LOCUS record as a Bio::GenBank::Locus object. Locus object is created automatically when Bio::GenBank#locus, entry_id etc. methods are called.
Attributes
Public Class Methods
Source
# File lib/bio/db/genbank/genbank.rb 35 def initialize(locus_line) 36 if locus_line.empty? 37 # do nothing (just for empty or incomplete entry string) 38 elsif locus_line.length > 75 # after Rel 126.0 39 @entry_id = locus_line[12..27].strip 40 @length = locus_line[29..39].to_i 41 @strand = locus_line[44..46].strip 42 @natype = locus_line[47..52].strip 43 @circular = locus_line[55..62].strip 44 @division = locus_line[63..66].strip 45 @date = locus_line[68..78].strip 46 else 47 @entry_id = locus_line[12..21].strip 48 @length = locus_line[22..29].to_i 49 @strand = locus_line[33..35].strip 50 @natype = locus_line[36..39].strip 51 @circular = locus_line[42..51].strip 52 @division = locus_line[52..54].strip 53 @date = locus_line[62..72].strip 54 end 55 end