class Bio::GenPept - BioRuby API documentation

aalen()

Alias for: length

aaseq()

Alias for: seq

circular() click to toggle source

   # File lib/bio/db/genbank/genpept.rb
35 def circular;         locus.circular;                end

date() click to toggle source

   # File lib/bio/db/genbank/genpept.rb
37 def date;             locus.date;                end

dbsource() click to toggle source

DBSOURCE

   # File lib/bio/db/genbank/genpept.rb
55 def dbsource
56   get('DBSOURCE')
57 end

division() click to toggle source

   # File lib/bio/db/genbank/genpept.rb
36 def division;         locus.division;                end

entry_id() click to toggle source

   # File lib/bio/db/genbank/genpept.rb
33 def entry_id;         locus.entry_id;                end

length() click to toggle source

   # File lib/bio/db/genbank/genpept.rb
34 def length;           locus.length;            end

Also aliased as: aalen

locus() click to toggle source

   # File lib/bio/db/genbank/genpept.rb
30 def locus
31   @data['LOCUS'] ||= Locus.new(get('LOCUS'))
32 end

seq() click to toggle source

ORIGIN

   # File lib/bio/db/genbank/genpept.rb
41 def seq
42   unless @data['SEQUENCE']
43     origin
44   end
45   Bio::Sequence::AA.new(@data['SEQUENCE'])
46 end

Also aliased as: aaseq

seq_len() click to toggle source

   # File lib/bio/db/genbank/genpept.rb
50 def seq_len
51   seq.length
52 end