# File lib/bio/appl/genscan/report.rb, line 67
def initialize(report)
  @predictions = []
  @genscan_version = nil
  @date_run   = nil
  @time       = nil
  @query_name = nil
  @length     = nil
  @gccontent  = nil
  @isochore   = nil
  @matrix     = nil

  report.each_line("\n") do |line|
    case line
    when %r^GENSCAN/
      parse_headline(line)
    when %r^Sequence/
      parse_sequence(line)
    when %r^Parameter/
      parse_parameter(line)
    when %r^Predicted genes/
      break
    end
  end

  # rests
  i = report.index(%r^Predicted gene/)
  j = report.index(%r^Predicted peptide sequence/)

  # genes/exons
  genes_region = report[i...j]
  genes_region.each_line("\n") do |line|
    if %rInit|Intr|Term|PlyA|Prom|Sngl/ =~ line
      gn, en = line.strip.split(" +")[0].split(%r\./).map {|i| i.to_i }
      add_exon(gn, en, line)
    end
  end

  # sequences (peptide|CDS)
  sequence_region = report[j...report.size]
  sequence_region.gsub!(%r^Predicted .+?:/, '')
  sequence_region.gsub!(%r^\s*$/, '')
  sequence_region.split(Bio::FastaFormat::RS).each do |ff|
    add_seq(Bio::FastaFormat.new(ff))
  end
end