class Bio::Hinv::HitDefinition

serv = Bio::Hinv::HitDefinition.new serv.query(“hit” => “HIT000000001”) puts serv.result puts serv.data_source_definition puts serv.cdna_rep_h_invitational puts serv.cdna_splicing_isoform_curation puts serv.data_source_db_reference_protein_motif_id puts serv.data_source_identity puts serv.data_source_coverage puts serv.data_source_homologous_species puts serv.data_source_similarity_category

Public Class Methods

new() click to toggle source

    # File lib/bio/io/hinv.rb
183 def initialize
184   @url = BASE_URI + "hit_definition.php"
185 end

Public Instance Methods

cdna_rep_h_invitational() click to toggle source

    # File lib/bio/io/hinv.rb
206 def cdna_rep_h_invitational
207   @xml.elements['//CDNA_REP-H-INVITATIONAL'].text
208 end

cdna_splicing_isoform_curation() click to toggle source

    # File lib/bio/io/hinv.rb
209 def cdna_splicing_isoform_curation
210   @xml.elements['//CDNA_SPLICING-ISOFORM_CURATION'].text
211 end

data_source_coverage() click to toggle source

    # File lib/bio/io/hinv.rb
218 def data_source_coverage
219   @xml.elements['//DATA-SOURCE_COVERAGE'].text.to_f
220 end

data_source_db_reference_protein_motif_id() click to toggle source

    # File lib/bio/io/hinv.rb
212 def data_source_db_reference_protein_motif_id
213   @xml.elements['//DATA-SOURCE_DB-REFERENCE_PROTEIN-MOTIF-ID'].text
214 end

data_source_definition()

Alias for: result

data_source_homologous_species() click to toggle source

    # File lib/bio/io/hinv.rb
221 def data_source_homologous_species
222   @xml.elements['//DATA-SOURCE_HOMOLOGOUS_SPECIES'].text
223 end

data_source_identity() click to toggle source

    # File lib/bio/io/hinv.rb
215 def data_source_identity
216   @xml.elements['//DATA-SOURCE_IDENTITY'].text.to_f
217 end

data_source_similarity_category() click to toggle source

    # File lib/bio/io/hinv.rb
224 def data_source_similarity_category
225   @xml.elements['//DATA-SOURCE_SIMILARITY-CATEGORY'].text
226 end

result() click to toggle source

<?xml version=‘1.0’ encoding=‘UTF-8’?> <H-Inv>

<HIT_FUNCTION>
 <H-INVITATIONAL-ID>HIT000000001</H-INVITATIONAL-ID>
 <DATA-SOURCE_DEFINITION>Rho guanine nucleotide exchange factor 10.</DATA-SOURCE_DEFINITION>
 <CDNA_REP-H-INVITATIONAL>Representative transcript</CDNA_REP-H-INVITATIONAL>
 <CDNA_SPLICING-ISOFORM_CURATION></CDNA_SPLICING-ISOFORM_CURATION>
 <DATA-SOURCE_DB-REFERENCE_PROTEIN-MOTIF-ID>NP_055444</DATA-SOURCE_DB-REFERENCE_PROTEIN-MOTIF-ID>
 <DATA-SOURCE_IDENTITY>100.0</DATA-SOURCE_IDENTITY>
 <DATA-SOURCE_COVERAGE>100.0</DATA-SOURCE_COVERAGE>
 <DATA-SOURCE_HOMOLOGOUS_SPECIES>Homo sapiens</DATA-SOURCE_HOMOLOGOUS_SPECIES>
 <DATA-SOURCE_SIMILARITY-CATEGORY>Identical to known human protein(Category I).</DATA-SOURCE_SIMILARITY-CATEGORY>
</HIT_FUNCTION>

</H-Inv>

    # File lib/bio/io/hinv.rb
201 def result
202   @xml.elements['//DATA-SOURCE_DEFINITION'].text
203 end

Also aliased as: data_source_definition