class Bio::KEGG::DRUG

Description¶ ↑

Bio::KEGG::DRUG is a parser class for the KEGG DRUG database entry. KEGG DRUG is a drug information database.

`References`¶ ↑

www.genome.jp/kegg/drug/

Constants

DELIMITER
TAGSIZE

Public Class Methods

new (entry)

Source

   # File lib/bio/db/kegg/drug.rb
45 def initialize(entry)
46   super(entry, TAGSIZE)
47 end

Creates a new Bio::KEGG::DRUG object.

Arguments:

(required) entry: (String) single entry as a string

Returns: Bio::KEGG::DRUG object

Calls superclass method Bio::NCBIDB::new

Public Instance Methods

activity ()

Source

   # File lib/bio/db/kegg/drug.rb
87 def activity
88   field_fetch('ACTIVITY')
89 end

Biological or chemical activity described in the ACTIVITY line.

Returns: String

comment ()

Source

    # File lib/bio/db/kegg/drug.rb
123 def comment
124   field_fetch('COMMENT')
125 end

COMMENT lines.

Returns: String

dblinks ()

Alias for: dblinks_as_hash

dblinks_as_hash ()

Source

   # File lib/bio/db/kegg/drug.rb
32 def dblinks_as_hash; super; end

Returns a Hash of the DB name and an Array of entry IDs in DBLINKS field.

Calls superclass method Bio::KEGG::Common::DblinksAsHash#dblinks_as_hash

Also aliased as: dblinks

dblinks_as_strings ()

Source

    # File lib/bio/db/kegg/drug.rb
109 def dblinks_as_strings
110   lines_fetch('DBLINKS')
111 end

List of database names and IDs, described in the DBLINKS lines.

Returns: Array containing String objects

entry_id ()

Source

   # File lib/bio/db/kegg/drug.rb
52 def entry_id
53   field_fetch('ENTRY')[/\S+/]
54 end

ID of the entry, described in the ENTRY line.

Returns: String

formula ()

Source

   # File lib/bio/db/kegg/drug.rb
73 def formula
74   field_fetch('FORMULA')
75 end

Chemical formula described in the FORMULA line.

Returns: String

kcf ()

Source

    # File lib/bio/db/kegg/drug.rb
116 def kcf
117   return "#{get('ATOM')}#{get('BOND')}"
118 end

ATOM, BOND lines.

Returns: String

mass ()

Source

   # File lib/bio/db/kegg/drug.rb
80 def mass
81   field_fetch('MASS').to_f
82 end

Molecular weight described in the MASS line.

Returns: Float

name ()

Source

   # File lib/bio/db/kegg/drug.rb
66 def name
67   names.first
68 end

The first name recorded in the NAME field.

Returns: String

names ()

Source

   # File lib/bio/db/kegg/drug.rb
59 def names
60   field_fetch('NAME').split(/\s*;\s*/)
61 end

Names described in the NAME line.

Returns: Array containing String objects

pathways ()

Alias for: pathways_as_hash

pathways_as_hash ()

Source

   # File lib/bio/db/kegg/drug.rb
37 def pathways_as_hash; super; end

Returns a Hash of the pathway ID and name in PATHWAY field.

Calls superclass method Bio::KEGG::Common::PathwaysAsHash#pathways_as_hash

Also aliased as: pathways

pathways_as_strings ()

Source

    # File lib/bio/db/kegg/drug.rb
102 def pathways_as_strings
103   lines_fetch('PATHWAY') 
104 end

List of KEGG Pathway IDs with short descriptions, described in the PATHWAY lines.

Returns: Array containing String objects

products ()

Source

    # File lib/bio/db/kegg/drug.rb
130 def products
131   lines_fetch('PRODUCTS')
132 end

Product names described in the PRODUCTS lines.

Returns: Array containing String objects

remark ()

Source

   # File lib/bio/db/kegg/drug.rb
94 def remark
95   field_fetch('REMARK')
96 end

REMARK lines.

Returns: String

class Bio::KEGG::DRUG

Description¶ ↑

References¶ ↑

`References`¶ ↑