class Bio::KEGG::Keggtab::DB
Attributes
abbrev[R]
Short name for the database. (e.g. ‘ec’, ‘hsa’, ‘eco’, …) korg and keggorg are alias for abbrev method.
aliases[R]
Array containing all alias names for the database. (e.g. [“H.sapiens”, “hsa”], [“E.coli”, “eco”], …)
keggorg[R]
Short name for the database. (e.g. ‘ec’, ‘hsa’, ‘eco’, …) korg and keggorg are alias for abbrev method.
korg[R]
Short name for the database. (e.g. ‘ec’, ‘hsa’, ‘eco’, …) korg and keggorg are alias for abbrev method.
name[R]
Database name. (e.g. ‘enzyme’, ‘h.sapies’, ‘e.coli’, …)
path[R]
Database flat file path. (e.g. ‘$BIOROOT/db/kegg/genes’, …)
type[R]
Definition type. (e.g. ‘enzyme’, ‘alias’, ‘genes’, …)
Public Class Methods
new(db_name, db_type, db_path, db_abbrev)
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Create a container object for database definitions.
# File lib/bio/db/kegg/keggtab.rb 73 def initialize(db_name, db_type, db_path, db_abbrev) 74 @name = db_name 75 @type = db_type 76 @path = db_path 77 @abbrev = db_abbrev 78 @aliases = Array.new 79 end