class Bio::KEGG::Keggtab::DB
Attributes
Short name for the database. (e.g. ‘ec’, ‘hsa’, ‘eco’, …) korg and keggorg are alias for abbrev method.
Array containing all alias names for the database. (e.g. [“H.sapiens”, “hsa”], [“E.coli”, “eco”], …)
Short name for the database. (e.g. ‘ec’, ‘hsa’, ‘eco’, …) korg and keggorg are alias for abbrev method.
Short name for the database. (e.g. ‘ec’, ‘hsa’, ‘eco’, …) korg and keggorg are alias for abbrev method.
Database name. (e.g. ‘enzyme’, ‘h.sapies’, ‘e.coli’, …)
Database flat file path. (e.g. ‘$BIOROOT/db/kegg/genes’, …)
Definition type. (e.g. ‘enzyme’, ‘alias’, ‘genes’, …)
Public Class Methods
Source
# File lib/bio/db/kegg/keggtab.rb 73 def initialize(db_name, db_type, db_path, db_abbrev) 74 @name = db_name 75 @type = db_type 76 @path = db_path 77 @abbrev = db_abbrev 78 @aliases = Array.new 79 end
Create a container object for database definitions.