class Bio::Map::SimpleMap
Description¶ ↑
This class handles the essential storage of name, type and units of a map. It includes Bio::Map::ActsLikeMap, and therefore supports the methods of that module.
Usage¶ ↑
my_map1 = Bio::Map::SimpleMap.new('RH_map_ABC (2006)', 'RH', 'cR')
my_map1.add_marker(Bio::Map::Marker.new('marker_a', '17')
my_map1.add_marker(Bio::Map::Marker.new('marker_b', '5')
Attributes
Length of the map
Mappings
Name of the map
Type of the map
Units of the map
Public Class Methods
Source
# File lib/bio/map.rb 353 def initialize(name = nil, type = nil, length = nil, units = nil) 354 @name, @type, @length, @units = name, type, length, units 355 @mappings_as_map = Array.new 356 end
Builds a new Bio::Map::SimpleMap object
Arguments:
-
name: name of the map
-
type: type of the map (e.g. linkage, radiation_hybrid, cytogenetic, …)
-
units: unit of the map (e.g. cM, cR, …)
- Returns
-
new
Bio::Map::SimpleMapobject