class Bio::PTS1::Report

Parser for the PTS1 prediction Report (in HTML). ↑

Attributes

cterm[R]

Amino acids subsequence at C-terminal region.

entry_id[R]

Query sequence name.

fp[R]

False positive probability

output[R]

Raw output

prediction[R]

Prediction (“Targeted”, “Twilight zone” and “Not targeted”)

profile[R]

Profile

score[R]

Score

sppta[R]

S_ppt (accessibility)

spptna[R]

S_ppt (non accessibility)

Public Class Methods

new(str) click to toggle source

Parsing PTS1 HTML report.

Example ↑

report = Bio::PTS1::Report.new(str)
report.cterm

    # File lib/bio/appl/pts1.rb
205 def initialize(str)
206   @cterm   = ''
207   @score   = 0
208   @profile = 0
209   @spptna  = 0
210   @sppta   = 0
211   @fp      = 0
212   @prediction = 0
213   
214   if /PTS1 query prediction/m =~ str
215     @output = str
216     parse
217   else
218     raise 
219   end
220 end