class Bio::PTS1::Report

Parser for the PTS1 prediction Report (in HTML).

Attributes

cterm[R]

Amino acids subsequence at C-terminal region.

entry_id[R]

Query sequence name.

fp[R]

False positive probability

output[R]

Raw output

prediction[R]

Prediction (“Targeted”, “Twilight zone” and “Not targeted”)

profile[R]

Profile

score[R]

Score

sppta[R]

S_ppt (accessibility)

spptna[R]

S_ppt (non accessibility)

Public Class Methods

new(str) click to toggle source

Parsing PTS1 HTML report.

Example

report = Bio::PTS1::Report.new(str)
report.cterm
# File lib/bio/appl/pts1.rb, line 205
def initialize(str)
  @cterm   = ''
  @score   = 0
  @profile = 0
  @spptna  = 0
  @sppta   = 0
  @fp      = 0
  @prediction = 0
  
  if /PTS1 query prediction/m =~ str
    @output = str
    parse
  else
    raise 
  end
end