class Bio::PTS1::Report

Parser for the `PTS1` prediction `Report` (in HTML).¶ ↑

Attributes

Amino acids subsequence at C-terminal region.

Query sequence name.

False positive probability

Raw output

Prediction (“Targeted”, “Twilight zone” and “Not targeted”)

Profile

Score

S_ppt (accessibility)

S_ppt (non accessibility)

Public Class Methods

Source

    # File lib/bio/appl/pts1.rb
205 def initialize(str)
206   @cterm   = ''
207   @score   = 0
208   @profile = 0
209   @spptna  = 0
210   @sppta   = 0
211   @fp      = 0
212   @prediction = 0
213   
214   if /PTS1 query prediction/m =~ str
215     @output = str
216     parse
217   else
218     raise 
219   end
220 end

Parsing PTS1 HTML report.

Example¶ ↑

report = Bio::PTS1::Report.new(str)
report.cterm