# File lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb, line 44 def primary self.collect {|a| a[0]} end
class Bio::RestrictionEnzyme::DoubleStranded::CutLocations
Contains an Array
of CutLocationPair objects.
Public Class Methods
new(*args)
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CutLocations constructor.
Contains an Array
of CutLocationPair objects.
Example:
clp1 = CutLocationPair.new(3,2) clp2 = CutLocationPair.new(7,9) pairs = CutLocations.new(clp1, clp2)
Arguments
-
args
: Any number ofCutLocationPair
objects
- Returns
-
nothing
Calls superclass method
# File lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb, line 33 def initialize(*args) validate_args(args) super(args) end
Public Instance Methods
complement()
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Returns an Array
of locations of cuts on the complementary
strand
Arguments
-
none
- Returns
-
Array
of locations of cuts on the complementary strand
# File lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb, line 54 def complement self.collect {|a| a[1]} end
primary()
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Returns an Array
of locations of cuts on the primary strand
Arguments
-
none
- Returns
-
Array
of locations of cuts on the primary strand
Protected Instance Methods
validate_args(args)
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# File lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb, line 62 def validate_args(args) args.each do |a| unless a.class == Bio::RestrictionEnzyme::DoubleStranded::CutLocationPair err = "Not a CutLocationPair\n" err += "class: #{a.class}\n" err += "inspect: #{a.inspect}" raise ArgumentError, err end end end