class Bio::SOSUI::Report
SOSUI output report parsing class¶ ↑
References¶ ↑
Constants
- DELIMITER
-
Delimiter
- RS
Attributes
Query entry_id
Returns the prediction result whether “MEMBRANE PROTEIN” or “SOLUBLE PROTEIN”.
Transmembrane helixes ary
Public Class Methods
Source
# File lib/bio/appl/sosui/report.rb 44 def initialize(output_report) 45 entry = output_report.split(/\n/) 46 47 @entry_id = entry[0].strip.sub(/^>/,'') 48 @prediction = entry[1].strip 49 @tms = 0 50 @tmhs = [] 51 parse_tmh(entry) if /MEMBRANE/ =~ @prediction 52 end
Parser for SOSUI output report.