class Bio::SOSUI::Report

SOSUI output report parsing class ↑

References ↑

Constants

DELIMITER

Delimiter

RS

Attributes

entry_id[R]

Query entry_id

prediction[R]

Returns the prediction result whether “MEMBRANE PROTEIN” or “SOLUBLE PROTEIN”.

tmhs[R]

Transmembrane helixes ary

Public Class Methods

new(output_report) click to toggle source

Parser for SOSUI output report.

   # File lib/bio/appl/sosui/report.rb
44 def initialize(output_report)
45   entry       = output_report.split(/\n/)
46 
47   @entry_id   = entry[0].strip.sub(/^>/,'')
48   @prediction = entry[1].strip
49   @tms        = 0
50   @tmhs       = []
51   parse_tmh(entry) if /MEMBRANE/ =~ @prediction
52 end