class Bio::Sim4::Report::Segment

Segment informations of a segment pair.

Attributes

from[R]

start position of the segment (the first position is 1)

seq[R]

sequence (with gaps) of the segment

to[R]

end position of the segment (including its position)

Public Class Methods

new(pos_st, pos_ed, seq = nil) click to toggle source

Creates a new Segment object. It is designed to be called internally from Bio::Sim4::Report::SegmentPair class. Users shall not use it directly.

# File lib/bio/appl/sim4/report.rb, line 253
def initialize(pos_st, pos_ed, seq = nil)
  @from = pos_st.to_i
  @to   = pos_ed.to_i
  @seq  = seq
end