class Bio::Sim4::Report::Segment

Segment informations of a segment pair.



start position of the segment (the first position is 1)


sequence (with gaps) of the segment


end position of the segment (including its position)

Public Class Methods

new(pos_st, pos_ed, seq = nil) click to toggle source

Creates a new Segment object. It is designed to be called internally from Bio::Sim4::Report::SegmentPair class. Users shall not use it directly.

    # File lib/bio/appl/sim4/report.rb
253 def initialize(pos_st, pos_ed, seq = nil)
254   @from = pos_st.to_i
255   @to   = pos_ed.to_i
256   @seq  = seq
257 end