class Bio::TRANSFAC

Constants

DELIMITER
TAGSIZE

Public Class Methods

Source

   # File lib/bio/db/transfac.rb
21 def initialize(entry)
22   super(entry, TAGSIZE)
23 end

Calls superclass method Bio::EMBLDB::new

Public Instance Methods

ac ()

Source

   # File lib/bio/db/transfac.rb
34 def ac
35   unless @data['AC']
36     @data['AC'] = fetch('AC')
37   end
38   @data['AC']
39 end

AC Accession number (1 per entry)

AC  T00001   in the case of FACTOR
AC  M00001   in the case of MATRIX
AC  R00001   in the case of SITE
AC  G000001  in the case of GENE
AC  C00001   in the case of CLASS
AC  00001    in the case of CELL

Also aliased as: entry_id

cc ()

Source

   # File lib/bio/db/transfac.rb
52 def cc
53   field_fetch('CC')
54 end

Also aliased as: comment

comment ()

Alias for: cc

date ()

Alias for: dt

dt ()

Source

   # File lib/bio/db/transfac.rb
47 def dt
48   field_fetch('DT')
49 end

DT Date (1 per entry)

DT  DD.MM.YYYY (created); ewi.
DT  DD.MM.YYYY (updated); mpr.

Also aliased as: date

entry_id ()

Alias for: ac

oc ()

Source

   # File lib/bio/db/transfac.rb
62 def oc
63   field_fetch('OC')
64 end

Also aliased as: org_class

org_class ()

Alias for: oc

org_species ()

Alias for: os

os ()

Source

   # File lib/bio/db/transfac.rb
57 def os
58   field_fetch('OS')
59 end

Also aliased as: org_species

ra ()

Source

   # File lib/bio/db/transfac.rb
72 def ra
73   field_fetch('RA')
74 end

Also aliased as: ref_authors

ref_authors ()

Alias for: ra

ref_data ()

Alias for: rl

ref_no ()

Alias for: rn

ref_title ()

Alias for: rt

rl ()

Source

   # File lib/bio/db/transfac.rb
82 def rl
83   field_fetch('RL')
84 end

Also aliased as: ref_data

rn ()

Source

   # File lib/bio/db/transfac.rb
67 def rn
68   field_fetch('RN')
69 end

Also aliased as: ref_no

rt ()

Source

   # File lib/bio/db/transfac.rb
77 def rt
78   field_fetch('RT')
79 end

Also aliased as: ref_title