class Bio::TRANSFAC
Constants
- DELIMITER
- TAGSIZE
Public Class Methods
Source
# File lib/bio/db/transfac.rb 21 def initialize(entry) 22 super(entry, TAGSIZE) 23 end
Calls superclass method
Bio::EMBLDB::new
Public Instance Methods
Source
# File lib/bio/db/transfac.rb 34 def ac 35 unless @data['AC'] 36 @data['AC'] = fetch('AC') 37 end 38 @data['AC'] 39 end
AC Accession number (1 per entry)
AC T00001 in the case of FACTOR AC M00001 in the case of MATRIX AC R00001 in the case of SITE AC G000001 in the case of GENE AC C00001 in the case of CLASS AC 00001 in the case of CELL
Also aliased as: entry_id
Source
# File lib/bio/db/transfac.rb 47 def dt 48 field_fetch('DT') 49 end
DT Date (1 per entry)
DT DD.MM.YYYY (created); ewi. DT DD.MM.YYYY (updated); mpr.
Also aliased as: date
Source
# File lib/bio/db/transfac.rb 62 def oc 63 field_fetch('OC') 64 end
Also aliased as: org_class
Source
# File lib/bio/db/transfac.rb 57 def os 58 field_fetch('OS') 59 end
Also aliased as: org_species
Source
# File lib/bio/db/transfac.rb 72 def ra 73 field_fetch('RA') 74 end
Also aliased as: ref_authors
Source
# File lib/bio/db/transfac.rb 82 def rl 83 field_fetch('RL') 84 end
Also aliased as: ref_data