class Bio::TRANSFAC

Constants

DELIMITER
TAGSIZE

Public Class Methods

new(entry) click to toggle source
Calls superclass method Bio::EMBLDB.new
# File lib/bio/db/transfac.rb, line 21
def initialize(entry)
  super(entry, TAGSIZE)
end

Public Instance Methods

ac() click to toggle source

AC Accession number (1 per entry)

AC  T00001   in the case of FACTOR
AC  M00001   in the case of MATRIX
AC  R00001   in the case of SITE
AC  G000001  in the case of GENE
AC  C00001   in the case of CLASS
AC  00001    in the case of CELL
# File lib/bio/db/transfac.rb, line 34
def ac
  unless @data['AC']
    @data['AC'] = fetch('AC')
  end
  @data['AC']
end
Also aliased as: entry_id
cc() click to toggle source
# File lib/bio/db/transfac.rb, line 52
def cc
  field_fetch('CC')
end
Also aliased as: comment
comment()
Alias for: cc
date()
Alias for: dt
dt() click to toggle source

DT Date (1 per entry)

DT  DD.MM.YYYY (created); ewi.
DT  DD.MM.YYYY (updated); mpr.
# File lib/bio/db/transfac.rb, line 47
def dt
  field_fetch('DT')
end
Also aliased as: date
entry_id()
Alias for: ac
oc() click to toggle source
# File lib/bio/db/transfac.rb, line 62
def oc
  field_fetch('OC')
end
Also aliased as: org_class
org_class()
Alias for: oc
org_species()
Alias for: os
os() click to toggle source
# File lib/bio/db/transfac.rb, line 57
def os
  field_fetch('OS')
end
Also aliased as: org_species
ra() click to toggle source
# File lib/bio/db/transfac.rb, line 72
def ra
  field_fetch('RA')
end
Also aliased as: ref_authors
ref_authors()
Alias for: ra
ref_data()
Alias for: rl
ref_no()
Alias for: rn
ref_title()
Alias for: rt
rl() click to toggle source
# File lib/bio/db/transfac.rb, line 82
def rl
  field_fetch('RL')
end
Also aliased as: ref_data
rn() click to toggle source
# File lib/bio/db/transfac.rb, line 67
def rn
  field_fetch('RN')
end
Also aliased as: ref_no
rt() click to toggle source
# File lib/bio/db/transfac.rb, line 77
def rt
  field_fetch('RT')
end
Also aliased as: ref_title