Returns ‘included’ or ‘not included’. If the value is ‘included’, #prediction contains a valid value.

Returns a Hash of cutoff values.

Returns “PLANT” or “NON-PLANT” networks.

Returns a Hash of the prediction results.

{“Name”=>“MGI_2141503”, “Loc.”=>“_”, “RC”=>3, “SP”=>0.271,

"other"=>0.844, "mTP"=>0.161, "cTP"=>0.031, "Length"=>640}

Keys: Name, Len, SP, mTP, other, Loc, RC Optional key for PLANT networks: cTP Optional key in Cleavage site: TPlen

Use ‘Length’ and ‘Loc.’ instead of ‘Len’ and ‘Loc’ respectively for the version 1.0 report.

Returns a Hash of the prediction results.

{“Name”=>“MGI_2141503”, “Loc.”=>“_”, “RC”=>3, “SP”=>0.271,

"other"=>0.844, "mTP"=>0.161, "cTP"=>0.031, "Length"=>640}

Keys: Name, Len, SP, mTP, other, Loc, RC Optional key for PLANT networks: cTP Optional key in Cleavage site: TPlen

Use ‘Length’ and ‘Loc.’ instead of ‘Len’ and ‘Loc’ respectively for the version 1.0 report.

Returns the query sequences.

Returns the program version.

Sets output report.

# File lib/bio/appl/targetp/report.rb, line 63
def initialize(str)
  @version                  = nil
  @query_sequences          = nil
  @cleavage_site_prediction = nil
  @networks                 = nil
  @prediction               = {}
  @cutoff                   = {}
  parse_entry(str)
end

Returns the predicted localization signal:

1. S (Signal peptide)

2. M (mTP)

3. C (cTP)

4. *

5. _

# File lib/bio/appl/targetp/report.rb, line 97
def loc
  if @prediction['Loc'] 
    @prediction['Loc']   # version 1.0
  else
    @prediction['Loc.']  # version 1.1
  end
end

Returns the name of query sequence.

# File lib/bio/appl/targetp/report.rb, line 76
def name
  @prediction['Name']
end

Returns length of query sequence.

# File lib/bio/appl/targetp/report.rb, line 82
def query_len
  if @prediction['Len']
    @prediction['Len']
  else
    @prediction['Length']
  end
end

Returns RC.

# File lib/bio/appl/targetp/report.rb, line 106
def rc
  @prediction['RC']
end