module Bio::Alignment

About Bio::Alignment

Bio::Alignment is a namespace of classes/modules for multiple sequence alignment.

Multiple alignment container classes

Bio::Alignment::OriginalAlignment

Bio::Alignment::SequenceArray

Bio::Alignment::SequenceHash

Bio::Alignment::Site

Modules

Bio::Alignment::EnumerableExtension

Mix-in for classes included Enumerable.

Bio::Alignment::ArrayExtension

Mix-in for Array or Array-like classes.

Bio::Alignment::HashExtension

Mix-in for Hash or Hash-like classes.

Bio::Alignment::SiteMethods

Bio::Alignment::PropertyMethods

Bio::Alignment::GAP

Compatibility from older BioRuby

Public Class Methods

new(*arg) click to toggle source

creates a new Bio::Alignment::OriginalAlignment object. Please refer document of Bio::Alignment::OriginalAlignment.new.

# File lib/bio/alignment.rb, line 2182
def self.new(*arg)
  OriginalAlignment.new(*arg)
end
new2(*arg) click to toggle source

creates a new Bio::Alignment::OriginalAlignment object. Please refer document of Bio::Alignment::OriginalAlignment.new2.

# File lib/bio/alignment.rb, line 2188
def self.new2(*arg)
  OriginalAlignment.new2(*arg)
end
readfiles(*files) click to toggle source

creates a new Bio::Alignment::OriginalAlignment object. Please refer document of Bio::Alignment::OriginalAlignment.readfiles.

# File lib/bio/alignment.rb, line 2194
def self.readfiles(*files)
  OriginalAlignment.readfiles(*files)
end