module Bio::Alignment

About Bio::Alignment

Bio::Alignment is a namespace of classes/modules for multiple sequence alignment.

Multiple alignment container classes

Bio::Alignment::OriginalAlignment

Bio::Alignment::SequenceArray

Bio::Alignment::SequenceHash

Bio::Alignment::Site

Modules

Bio::Alignment::EnumerableExtension

Mix-in for classes included Enumerable.

Bio::Alignment::ArrayExtension

Mix-in for Array or Array-like classes.

Bio::Alignment::HashExtension

Mix-in for Hash or Hash-like classes.

Bio::Alignment::SiteMethods

Bio::Alignment::PropertyMethods

Bio::Alignment::GAP

Compatibility from older BioRuby

Public Class Methods

new(*arg) click to toggle source

creates a new Bio::Alignment::OriginalAlignment object. Please refer document of OriginalAlignment.new.

     # File lib/bio/alignment.rb
2182 def self.new(*arg)
2183   OriginalAlignment.new(*arg)
2184 end
new2(*arg) click to toggle source

creates a new Bio::Alignment::OriginalAlignment object. Please refer document of OriginalAlignment.new2.

     # File lib/bio/alignment.rb
2188 def self.new2(*arg)
2189   OriginalAlignment.new2(*arg)
2190 end
readfiles(*files) click to toggle source

creates a new Bio::Alignment::OriginalAlignment object. Please refer document of OriginalAlignment.readfiles.

     # File lib/bio/alignment.rb
2194 def self.readfiles(*files)
2195   OriginalAlignment.readfiles(*files)
2196 end