module Bio::Alignment
About Bio::Alignment
¶ ↑
Bio::Alignment
is a namespace of classes/modules for multiple sequence alignment.
Multiple alignment container classes¶ ↑
Bio::Alignment::OriginalAlignment
¶ ↑
Bio::Alignment::SequenceArray
¶ ↑
Bio::Alignment::SequenceHash
¶ ↑
Bio::Alignment::Site
¶ ↑
Modules¶ ↑
Bio::Alignment::EnumerableExtension
¶ ↑
Mix-in for classes included Enumerable.
Bio::Alignment::ArrayExtension
¶ ↑
Mix-in for Array or Array-like classes.
Bio::Alignment::HashExtension
¶ ↑
Mix-in for Hash or Hash-like classes.
Bio::Alignment::SiteMethods
¶ ↑
Bio::Alignment::PropertyMethods
¶ ↑
Bio::Alignment::GAP
¶ ↑
Compatibility from older BioRuby¶ ↑
Public Class Methods
new(*arg)
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creates a new Bio::Alignment::OriginalAlignment
object. Please refer document of OriginalAlignment.new
.
# File lib/bio/alignment.rb 2182 def self.new(*arg) 2183 OriginalAlignment.new(*arg) 2184 end
new2(*arg)
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creates a new Bio::Alignment::OriginalAlignment
object. Please refer document of OriginalAlignment.new2
.
# File lib/bio/alignment.rb 2188 def self.new2(*arg) 2189 OriginalAlignment.new2(*arg) 2190 end
readfiles(*files)
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creates a new Bio::Alignment::OriginalAlignment
object. Please refer document of OriginalAlignment.readfiles
.
# File lib/bio/alignment.rb 2194 def self.readfiles(*files) 2195 OriginalAlignment.readfiles(*files) 2196 end