module Bio::Alignment

About `Bio::Alignment`¶ ↑

Bio::Alignment is a namespace of classes/modules for multiple sequence alignment.

Multiple alignment container classes¶ ↑

`Bio::Alignment::OriginalAlignment`¶ ↑

`Bio::Alignment::SequenceArray`¶ ↑

`Bio::Alignment::SequenceHash`¶ ↑

`Bio::Alignment::Site`¶ ↑

Modules¶ ↑

`Bio::Alignment::EnumerableExtension`¶ ↑

Mix-in for classes included Enumerable.

`Bio::Alignment::ArrayExtension`¶ ↑

Mix-in for Array or Array-like classes.

`Bio::Alignment::HashExtension`¶ ↑

Mix-in for Hash or Hash-like classes.

`Bio::Alignment::SiteMethods`¶ ↑

`Bio::Alignment::PropertyMethods`¶ ↑

`Bio::Alignment::GAP`¶ ↑

Compatibility from older BioRuby¶ ↑

Public Class Methods

Source

     # File lib/bio/alignment.rb
2182 def self.new(*arg)
2183   OriginalAlignment.new(*arg)
2184 end

creates a new Bio::Alignment::OriginalAlignment object. Please refer document of OriginalAlignment.new.

Source

     # File lib/bio/alignment.rb
2188 def self.new2(*arg)
2189   OriginalAlignment.new2(*arg)
2190 end

creates a new Bio::Alignment::OriginalAlignment object. Please refer document of OriginalAlignment.new2.

readfiles (*files)

Source

     # File lib/bio/alignment.rb
2194 def self.readfiles(*files)
2195   OriginalAlignment.readfiles(*files)
2196 end

creates a new Bio::Alignment::OriginalAlignment object. Please refer document of OriginalAlignment.readfiles.