class Bio::Blast::Report::Hsp
Attributes
align_len[RW]
Length of the alignment used
bit_score[RW]
Score (in bits) of HSP
density[RW]
Score density
evalue[RW]
E-value of HSP
gaps[RW]
Number of gaps in HSP
hit_frame[RW]
Translation frame of subject
hit_from[RW]
Start of HSP in subject
hit_to[RW]
End of HSP
hseq[RW]
Alignment string for subject (with gaps)
hsp[R]
identity[RW]
Number of identities in HSP
midline[RW]
Formating middle line
mismatch_count[RW]
Available only for ‘-m 8’ format outputs.
num[RW]
HSP number
pattern_from[RW]
Start of PHI-BLAST pattern
pattern_to[RW]
End of PHI-BLAST pattern
percent_identity[RW]
Available only for ‘-m 8’ format outputs.
positive[RW]
Number of positives in HSP
qseq[RW]
Alignment string for the query (with gaps)
query_frame[RW]
Translation frame of query
query_from[RW]
Start of HSP in query
query_to[RW]
End of HSP
score[RW]
Sscore of HSP
Public Class Methods
new()
click to toggle source
# File lib/bio/appl/blast/report.rb 324 def initialize 325 @hsp = {} 326 end