class Bio::Blast::Report::Hsp

Length of the alignment used

Score (in bits) of HSP

Score density

E-value of HSP

Number of gaps in HSP

Translation frame of subject

Start of HSP in subject

End of HSP

Alignment string for subject (with gaps)

Number of identities in HSP

Formating middle line

Available only for ‘-m 8’ format outputs.

HSP number

Start of PHI-BLAST pattern

End of PHI-BLAST pattern

Available only for ‘-m 8’ format outputs.

Number of positives in HSP

Alignment string for the query (with gaps)

Translation frame of query

Start of HSP in query

End of HSP

Sscore of HSP