class Bio::TRANSFAC::FACTOR

Public Class Methods

Source

    # File lib/bio/db/transfac.rb
199 def initialize(entry)
200   super(entry)
201 end

Calls superclass method Bio::TRANSFAC::new

Public Instance Methods

bs ()

Source

    # File lib/bio/db/transfac.rb
284 def bs
285   field_fetch('BS')
286 end

BS Bound sites (site accession no.; site ID; quality: N; biological BS species)

cl ()

Source

    # File lib/bio/db/transfac.rb
225 def cl
226   field_fetch('CL')
227 end

CL Classification (class accession no.; class identifier; decimal CL classification number.)

cn ()

Source

    # File lib/bio/db/transfac.rb
262 def cn
263   field_fetch('CN')
264 end

CN Cell specificity (negative)

cp ()

Source

    # File lib/bio/db/transfac.rb
257 def cp
258   field_fetch('CP')
259 end

CP Cell specificity (positive)

dr ()

Source

    # File lib/bio/db/transfac.rb
214 def dr
215   field_fetch('DR')
216 end

DR Cross-references to other databases (>=0 per entry)

fa ()

Source

    # File lib/bio/db/transfac.rb
204 def fa
205   field_fetch('FA')
206 end

FA Factor name

ff ()

Source

    # File lib/bio/db/transfac.rb
267 def ff
268   field_fetch('FF')
269 end

FF Functional features

ft ()

Source

    # File lib/bio/db/transfac.rb
247 def ft
248   field_fetch('FT')
249 end

FT Feature table (1st position last position feature)

ho ()

Source

    # File lib/bio/db/transfac.rb
219 def ho
220   field_fetch('HO')
221 end

HO Homologs (suggested)

in ()

Source

    # File lib/bio/db/transfac.rb
273 def in
274   field_fetch('IN')
275 end

IN Interacting factors (factor accession no.; factor name; IN biological species.)

mx ()

Source

    # File lib/bio/db/transfac.rb
278 def mx
279   field_fetch('MX')
280 end

MX Matrix (matrix accession no.; matrix identifier)

sc ()

Source

    # File lib/bio/db/transfac.rb
242 def sc
243   field_fetch('SC')
244 end

SC Sequence comment, i. e. source of the protein sequence

sf ()

Source

    # File lib/bio/db/transfac.rb
252 def sf
253   field_fetch('SF')
254 end

SF Structural features

sq ()

Source

    # File lib/bio/db/transfac.rb
237 def sq
238   field_fetch('SQ')
239 end

SQ Sequence

sy ()

Source

    # File lib/bio/db/transfac.rb
209 def sy
210   field_fetch('SY')
211 end

SY Synonyms

sz ()

Source

    # File lib/bio/db/transfac.rb
232 def sz
233   field_fetch('SZ')
234 end

SZ Size (length (number of amino acids); calculated molecular mass SZ in kDa; experimental molecular mass (or range) in kDa SZ (experimental method) [Ref]