class Bio::TRANSFAC::FACTOR

Public Class Methods

new(entry) click to toggle source

Calls superclass method Bio::TRANSFAC::new

    # File lib/bio/db/transfac.rb
199 def initialize(entry)
200   super(entry)
201 end

Public Instance Methods

bs() click to toggle source

BS Bound sites (site accession no.; site ID; quality: N; biological BS species)

    # File lib/bio/db/transfac.rb
284 def bs
285   field_fetch('BS')
286 end

cl() click to toggle source

CL Classification (class accession no.; class identifier; decimal CL classification number.)

    # File lib/bio/db/transfac.rb
225 def cl
226   field_fetch('CL')
227 end

cn() click to toggle source

CN Cell specificity (negative)

    # File lib/bio/db/transfac.rb
262 def cn
263   field_fetch('CN')
264 end

cp() click to toggle source

CP Cell specificity (positive)

    # File lib/bio/db/transfac.rb
257 def cp
258   field_fetch('CP')
259 end

dr() click to toggle source

DR Cross-references to other databases (>=0 per entry)

    # File lib/bio/db/transfac.rb
214 def dr
215   field_fetch('DR')
216 end

fa() click to toggle source

FA Factor name

    # File lib/bio/db/transfac.rb
204 def fa
205   field_fetch('FA')
206 end

ff() click to toggle source

FF Functional features

    # File lib/bio/db/transfac.rb
267 def ff
268   field_fetch('FF')
269 end

ft() click to toggle source

FT Feature table (1st position last position feature)

    # File lib/bio/db/transfac.rb
247 def ft
248   field_fetch('FT')
249 end

ho() click to toggle source

HO Homologs (suggested)

    # File lib/bio/db/transfac.rb
219 def ho
220   field_fetch('HO')
221 end

in() click to toggle source

IN Interacting factors (factor accession no.; factor name; IN biological species.)

    # File lib/bio/db/transfac.rb
273 def in
274   field_fetch('IN')
275 end

mx() click to toggle source

MX Matrix (matrix accession no.; matrix identifier)

    # File lib/bio/db/transfac.rb
278 def mx
279   field_fetch('MX')
280 end

sc() click to toggle source

SC Sequence comment, i. e. source of the protein sequence

    # File lib/bio/db/transfac.rb
242 def sc
243   field_fetch('SC')
244 end

sf() click to toggle source

SF Structural features

    # File lib/bio/db/transfac.rb
252 def sf
253   field_fetch('SF')
254 end

sq() click to toggle source

SQ Sequence

    # File lib/bio/db/transfac.rb
237 def sq
238   field_fetch('SQ')
239 end

sy() click to toggle source

SY Synonyms

    # File lib/bio/db/transfac.rb
209 def sy
210   field_fetch('SY')
211 end

sz() click to toggle source

SZ Size (length (number of amino acids); calculated molecular mass SZ in kDa; experimental molecular mass (or range) in kDa SZ (experimental method) [Ref]

    # File lib/bio/db/transfac.rb
232 def sz
233   field_fetch('SZ')
234 end