class Bio::TRANSFAC::FACTOR

Public Class Methods

new(entry) click to toggle source
Calls superclass method Bio::TRANSFAC.new
# File lib/bio/db/transfac.rb, line 199
def initialize(entry)
  super(entry)
end

Public Instance Methods

bs() click to toggle source

BS Bound sites (site accession no.; site ID; quality: N; biological BS species)

# File lib/bio/db/transfac.rb, line 284
def bs
  field_fetch('BS')
end
cl() click to toggle source

CL Classification (class accession no.; class identifier; decimal CL classification number.)

# File lib/bio/db/transfac.rb, line 225
def cl
  field_fetch('CL')
end
cn() click to toggle source

CN Cell specificity (negative)

# File lib/bio/db/transfac.rb, line 262
def cn
  field_fetch('CN')
end
cp() click to toggle source

CP Cell specificity (positive)

# File lib/bio/db/transfac.rb, line 257
def cp
  field_fetch('CP')
end
dr() click to toggle source

DR Cross-references to other databases (>=0 per entry)

# File lib/bio/db/transfac.rb, line 214
def dr
  field_fetch('DR')
end
fa() click to toggle source

FA Factor name

# File lib/bio/db/transfac.rb, line 204
def fa
  field_fetch('FA')
end
ff() click to toggle source

FF Functional features

# File lib/bio/db/transfac.rb, line 267
def ff
  field_fetch('FF')
end
ft() click to toggle source

FT Feature table (1st position last position feature)

# File lib/bio/db/transfac.rb, line 247
def ft
  field_fetch('FT')
end
ho() click to toggle source

HO Homologs (suggested)

# File lib/bio/db/transfac.rb, line 219
def ho
  field_fetch('HO')
end
in() click to toggle source

IN Interacting factors (factor accession no.; factor name; IN biological species.)

# File lib/bio/db/transfac.rb, line 273
def in
  field_fetch('IN')
end
mx() click to toggle source

MX Matrix (matrix accession no.; matrix identifier)

# File lib/bio/db/transfac.rb, line 278
def mx
  field_fetch('MX')
end
sc() click to toggle source

SC Sequence comment, i. e. source of the protein sequence

# File lib/bio/db/transfac.rb, line 242
def sc
  field_fetch('SC')
end
sf() click to toggle source

SF Structural features

# File lib/bio/db/transfac.rb, line 252
def sf
  field_fetch('SF')
end
sq() click to toggle source

SQ Sequence

# File lib/bio/db/transfac.rb, line 237
def sq
  field_fetch('SQ')
end
sy() click to toggle source

SY Synonyms

# File lib/bio/db/transfac.rb, line 209
def sy
  field_fetch('SY')
end
sz() click to toggle source

SZ Size (length (number of amino acids); calculated molecular mass SZ in kDa; experimental molecular mass (or range) in kDa SZ (experimental method) [Ref]

# File lib/bio/db/transfac.rb, line 232
def sz
  field_fetch('SZ')
end